You think I'm wrong with the Override files place?
Yes, because I changed the directory tree in resource.cfg to suit my own needs.
Priority 501
PackedFile Mods/packages/Override/*.package
PackedFile Mods/packages/Override/*/*.package
PackedFile Mods/packages/Override/*/*/*.package
PackedFile Mods/packages/Override/*/*/*/*.package
PackedFile Mods/packages/Override/*/*/*/*/*.package
PackedFile Mods/packages/Override/*/*/*/*/*/*.package
PackedFile Mods/packages/Override/*/*/*/*/*/*/*.package
PackedFile Mods/packages/Override/*/*/*/*/*/*/*/*.package
Priority 500
DirectoryFiles Mods/Files/... autoupdate
PackedFile Mods/Packages/*.package
PackedFile Mods/Packages/*/*.package
PackedFile Mods/Packages/*/*/*.package
PackedFile Mods/Packages/*/*/*/*.package
PackedFile Mods/Packages/*/*/*/*/*.package
PackedFile Mods/Packages/*/*/*/*/*/*.package
PackedFile Mods/Packages/*/*/*/*/*/*/*.package
PackedFile Mods/Packages/*/*/*/*/*/*/*/*.package
Priority 499
PackedFile Mods/packages/Test/*.package
PackedFile Mods/packages/Test/*/*.package
PackedFile Mods/packages/Test/*/*/*.package
PackedFile Mods/packages/Test/*/*/*/*.package
PackedFile Mods/packages/Test/*/*/*/*/*.package
PackedFile Mods/packages/Test/*/*/*/*/*/*.package
PackedFile Mods/packages/Test/*/*/*/*/*/*/*.package
PackedFile Mods/packages/Test/*/*/*/*/*/*/*/*.package
Priority -50
PackedFile Mods/packages/Probation/*.package
PackedFile Mods/packages/Probation/*/*.package
PackedFile Mods/packages/Probation/*/*/*.package
PackedFile Mods/packages/Probation/*/*/*/*.package
PackedFile Mods/packages/Probation/*/*/*/*/*.package
PackedFile Mods/packages/Probation/*/*/*/*/*/*.package
PackedFile Mods/packages/Probation/*/*/*/*/*/*/*.package
PackedFile Mods/packages/Probation/*/*/*/*/*/*/*/*.package